sampleID HGNC_symbol Chromosom Pos Ref Alt Mutation Consquence sample1 SLC35E2 chr1 1660726 T C MODIFIER 3_prime_UTR_variant sample1 LRRC47 chr1 3701663 T C LOW synonymous_variant sample1 EXOSC10 chr1 11141187 C G LOW synonymous_variant sample1 FUCA1 chr1 24180962 T C MODERATE missense_variant sample1 RCC1 chr1 28835426 AT A MODIFIER intron_variant sample1 RCC1 chr1 28864435 A G LOW synonymous_variant sample1 CDCA8 chr1 38174366 G T MODIFIER 3_prime_UTR_variant sample1 EFCAB14 chr1 47141718 T C MODIFIER 3_prime_UTR_variant sample1 RAB3B chr1 52375872 T C MODIFIER 3_prime_UTR_variant sample1 GBP1 chr1 89518623 C T MODIFIER 3_prime_UTR_variant sample1 ATP8B2 chr1 154320942 A G LOW synonymous_variant sample1 DEDD chr1 161094190 A G LOW synonymous_variant sample1 ATF6 chr1 161930908 G A MODIFIER 3_prime_UTR_variant sample1 FAM20B chr1 179042227 T C MODIFIER 3_prime_UTR_variant sample1 NMNAT2 chr1 183219348 A T MODIFIER 3_prime_UTR_variant sample1 SMG7 chr1 183486859 G A LOW synonymous_variant sample1 RAB29 chr1 205740668 G C MODERATE missense_variant sample1 PTPN14 chr1 214542819 T C LOW synonymous_variant sample1 CENPF chr1 214814995 C T MODERATE missense_variant sample1 CENPF chr1 214816224 G A MODERATE missense_variant sample1 CENPF chr1 214819587 A G MODERATE missense_variant sample1 CENPF chr1 214826196 G A MODERATE missense_variant sample1 TP53BP2 chr1 223991119 G T MODERATE missense_variant sample1 SH3BP5L chr1 249105926 G C MODIFIER 3_prime_UTR_variant sample1 TRAPPC12 chr2 3481531 T C LOW synonymous_variant sample1 MBOAT2 chr2 8998624 A G MODIFIER 3_prime_UTR_variant sample1 EIF2B4 chr2 27590038 G C MODERATE missense_variant sample1 ZFP36L2 chr2 43450901 AAT A MODIFIER 3_prime_UTR_variant sample1 PSME4 chr2 54092485 CA C MODIFIER 3_prime_UTR_variant sample1 CNRIP1 chr2 68546374 T C LOW synonymous_variant sample1 MRPS9 chr2 105716266 A G MODIFIER 3_prime_UTR_variant sample1 TANC1 chr2 159954175 C T MODERATE missense_variant sample1 INPP1 chr2 191231458 G A LOW synonymous_variant sample1 INPP1 chr2 191231503 G A LOW synonymous_variant sample1 INPP1 chr2 191235901 A C LOW synonymous_variant sample1 AOX1 chr2 201535646 C T MODIFIER 3_prime_UTR_variant sample1 GPR1 chr2 207041053 T C MODERATE missense_variant sample1 FN1 chr2 216269254 T G LOW synonymous_variant sample1 FAM134A chr2 220046975 C A MODERATE missense_variant sample1 DNPEP chr2 220250147 A G MODERATE missense_variant&splice_region_variant sample1 OBSL1 chr2 220427395 G A LOW splice_region_variant&synonymous_variant sample1 CAB39 chr2 231683487 CTT C MODIFIER 3_prime_UTR_variant sample1 CAB39 chr2 231685205 T C MODIFIER 3_prime_UTR_variant sample1 HJURP chr2 234749783 C G MODERATE missense_variant sample1 SH3BP5 chr3 15311325 A G LOW synonymous_variant sample1 TBC1D5 chr3 17200091 T C MODIFIER 3_prime_UTR_variant sample1 MAPKAPK3 chr3 50685574 CA C MODIFIER 3_prime_UTR_variant sample1 GNL3 chr3 52727257 G A MODERATE missense_variant sample1 WNT5A chr3 55501175 T C MODIFIER 3_prime_UTR_variant sample1 FAM208A chr3 56667682 G C MODERATE missense_variant sample1 CGGBP1 chr3 88103932 G A MODIFIER 3_prime_UTR_variant sample1 PHLDB2 chr3 111693780 A C MODIFIER 3_prime_UTR_variant sample1 PHLDB2 chr3 111693785 C T MODIFIER 3_prime_UTR_variant sample1 PHLDB2 chr3 111693823 A T MODIFIER 3_prime_UTR_variant sample1 B4GALT4 chr3 118931389 C T MODIFIER 3_prime_UTR_variant sample1 PLXND1 chr3 129291499 G A LOW synonymous_variant sample1 MFSD1 chr3 158537443 A G MODERATE missense_variant sample1 NCBP2 chr3 196670092 C A MODIFIER upstream_gene_variant sample1 FYTTD1 chr3 197509098 A G MODIFIER 3_prime_UTR_variant sample1 FGFRL1 chr4 1019011 C T MODERATE missense_variant sample1 TACC3 chr4 1732978 G A MODERATE missense_variant sample1 EVC chr4 5814607 CT C MODIFIER 3_prime_UTR_variant sample1 GRSF1 chr4 71705262 A G MODERATE missense_variant sample1 SCD5 chr4 83551007 G A MODIFIER 3_prime_UTR_variant sample1 FGF2 chr4 123814900 G A MODIFIER 3_prime_UTR_variant sample1 FGF2 chr4 123816317 C G MODIFIER 3_prime_UTR_variant sample1 FGF2 chr4 123817528 T C MODIFIER 3_prime_UTR_variant sample1 SLC7A11 chr4 139085917 T C MODIFIER 3_prime_UTR_variant sample1 WWC2 chr4 184238670 C G MODIFIER 3_prime_UTR_variant sample1 SLC30A5 chr5 68417643 C T LOW synonymous_variant sample1 COL4A3BP chr5 74681773 T C LOW synonymous_variant sample1 F2R chr5 76030796 T C MODIFIER 3_prime_UTR_variant sample1 CETN3 chr5 89703641 C G MODERATE missense_variant sample1 ERAP1 chr5 96118852 G C MODERATE missense_variant sample1 ERAP1 chr5 96124330 T C MODERATE missense_variant sample1 ERAP1 chr5 96126308 A G LOW synonymous_variant sample1 MAN2A1 chr5 109190935 TCTC T MODERATE disruptive_inframe_deletion sample1 MAN2A1 chr5 109203296 A G MODIFIER 3_prime_UTR_variant sample1 MAN2A1 chr5 109203921 C T MODIFIER 3_prime_UTR_variant sample1 KDM3B chr5 137754695 T C LOW synonymous_variant sample1 REEP2 chr5 137782204 A C MODIFIER 3_prime_UTR_variant sample1 TSPAN17 chr5 176084894 C T MODIFIER 3_prime_UTR_variant sample1 NQO2 chr6 3010390 C T MODERATE missense_variant sample1 TRIM26.8 chr6 30166886 C T MODIFIER 5_prime_UTR_variant sample1 PRRC2A.5 chr6 31595772 GCCTGCTGCCCCA G MODERATE disruptive_inframe_deletion sample1 C6ORF1 chr6 34214322 C G MODERATE missense_variant sample1 CCDC167 chr6 37450914 T C MODIFIER 3_prime_UTR_variant sample1 VEGFA chr6 43745577 C T MODIFIER intron_variant sample1 CDC5L chr6 44413463 T A LOW synonymous_variant sample1 LOC730101 chr6 52529358 G A MODIFIER non_coding_exon_variant sample1 LOC730101 chr6 52529714 C G MODIFIER non_coding_exon_variant sample1 TMEM14A chr6 52531972 C T MODIFIER upstream_gene_variant sample1 PGM3 chr6 83881740 T C LOW synonymous_variant sample1 ASCC3 chr6 101094554 A G LOW synonymous_variant sample1 TSPYL4 chr6 116571255 G A MODIFIER 3_prime_UTR_variant sample1 TSPYL4 chr6 116572971 C G MODIFIER 3_prime_UTR_variant sample1 STX7 chr6 132780167 G A MODIFIER 3_prime_UTR_variant sample1 ACTB chr7 5568493 A G MODIFIER intron_variant sample1 ACTB chr7 5569327 G A MODIFIER intron_variant sample1 DFNA5 chr7 24758818 G T MODERATE missense_variant sample1 ANLN chr7 36445856 G A MODERATE missense_variant sample1 OGDH chr7 44747903 T C MODIFIER 3_prime_UTR_variant sample1 H2AFV chr7 44866832 T G MODIFIER 3_prime_UTR_variant sample1 H2AFV chr7 44869276 A G MODIFIER 3_prime_UTR_variant sample1 LRCH4 chr7 100172495 G A MODIFIER 3_prime_UTR_variant sample1 CAV2 chr7 116147908 C G MODIFIER 3_prime_UTR_variant sample1 PODXL chr7 131186424 C T MODIFIER 3_prime_UTR_variant sample1 PODXL chr7 131195712 G A MODERATE missense_variant sample1 PLXNA4 chr7 131808573 G A MODIFIER 3_prime_UTR_variant sample1 PLXNA4 chr7 131810411 C T MODIFIER 3_prime_UTR_variant sample1 PLXNA4 chr7 131810439 C G MODIFIER 3_prime_UTR_variant sample1 PLXNA4 chr7 131810490 G T MODIFIER 3_prime_UTR_variant sample1 PLXNA4 chr7 131814529 G A MODIFIER 3_prime_UTR_variant sample1 PLXNA4 chr7 131815220 G A MODIFIER 3_prime_UTR_variant sample1 PLXNA4 chr7 131815310 A G LOW synonymous_variant sample1 ARHGEF10 chr8 1808256 A G LOW synonymous_variant sample1 PCM1 chr8 17796382 A G MODERATE missense_variant sample1 PCM1 chr8 17796383 C T LOW synonymous_variant sample1 SH2D4A chr8 19252602 C T MODIFIER 3_prime_UTR_variant sample1 DUSP4 chr8 29207872 G A LOW 5_prime_UTR_premature_start_codon_gain_variant sample1 TRAM1 chr8 71486085 A C MODIFIER 3_prime_UTR_variant sample1 CPQ chr8 97847358 G T LOW synonymous_variant sample1 RRM2B chr8 103219240 A G MODIFIER 3_prime_UTR_variant sample1 EFR3A chr8 133025671 C G MODIFIER 3_prime_UTR_variant sample1 ST3GAL1 chr8 134469208 C G MODIFIER 3_prime_UTR_variant sample1 CPSF1 chr8 145623963 G A LOW synonymous_variant sample1 ADAMTSL1 chr9 18504916 T A LOW synonymous_variant sample1 MELK chr9 36674842 C T LOW synonymous_variant sample1 SHC3 chr9 91622691 A G MODIFIER 3_prime_UTR_variant sample1 SHC3 chr9 91656963 T C LOW synonymous_variant sample1 RNF20 chr9 104309445 T C LOW synonymous_variant sample1 IKBKAP chr9 111641825 G A MODERATE missense_variant sample1 PAPPA chr9 119162545 C A MODIFIER 3_prime_UTR_variant sample1 PHF19 chr9 123632045 A G LOW synonymous_variant sample1 CERCAM chr9 131199576 A C MODIFIER 3_prime_UTR_variant sample1 FNBP1 chr9 132686186 A G LOW synonymous_variant sample1 UBAC1 chr9 138838140 T C LOW synonymous_variant sample1 TOR4A chr9 140174966 GGGAGCGGAGGC G MODIFIER 3_prime_UTR_variant sample1 CUL2 chr10 35302705 C T LOW synonymous_variant sample1 ERCC6 chr10 50681033 G A LOW synonymous_variant sample1 ZWINT chr10 58118630 T C MODERATE missense_variant sample1 REEP3 chr10 65381740 A G MODIFIER 3_prime_UTR_variant sample1 SRGN chr10 70864283 CA C MODIFIER 3_prime_UTR_variant sample1 COL13A1 chr10 71657272 A G LOW synonymous_variant sample1 C10ORF54 chr10 73520632 A C MODERATE missense_variant sample1 KIF11 chr10 94414567 A T MODIFIER 3_prime_UTR_variant sample1 TM9SF3 chr10 98279122 A T MODIFIER 3_prime_UTR_variant sample1 SLK chr10 105762591 G A MODERATE missense_variant sample1 TRUB1 chr10 116702425 A C MODERATE missense_variant sample1 BUB3 chr10 124924430 G T MODIFIER 3_prime_UTR_variant sample1 MKI67 chr10 129896660 G A MODIFIER 3_prime_UTR_variant sample1 MKI67 chr10 129902281 G A MODERATE missense_variant sample1 MKI67 chr10 129903016 T C MODERATE missense_variant sample1 MKI67 chr10 129905896 T A MODERATE missense_variant sample1 RRM1 chr11 4159929 C A MODIFIER 3_prime_UTR_variant sample1 RNF141 chr11 10534866 C T MODIFIER 3_prime_UTR_variant sample1 HPS5 chr11 18327684 G T LOW splice_region_variant&synonymous_variant sample1 LGR4 chr11 27414056 C T LOW synonymous_variant sample1 LGR4 chr11 27494096 C G LOW 5_prime_UTR_premature_start_codon_gain_variant sample1 ARFGAP2 chr11 47188314 T C LOW synonymous_variant sample1 PTPRJ chr11 48191303 T C MODIFIER 3_prime_UTR_variant sample1 ZFP91 chr11 58386650 A G MODIFIER 3_prime_UTR_variant sample1 RPS6KA4 chr11 64138805 T C LOW synonymous_variant sample1 EHBP1L1 chr11 65347636 G C MODERATE missense_variant sample1 SART1 chr11 65732651 G A LOW synonymous_variant sample1 RIN1 chr11 66100152 T C LOW synonymous_variant sample1 AAMDC chr11 77583266 G A MODERATE missense_variant sample1 ENDOD1 chr11 94863499 G T MODIFIER 3_prime_UTR_variant sample1 CLMP chr11 122943495 T C MODIFIER 3_prime_UTR_variant sample1 ADAMTS15 chr11 130345007 C T MODIFIER 3_prime_UTR_variant sample1 ERC1 chr12 1601896 C T MODIFIER 3_prime_UTR_variant sample1 ADIPOR2 chr12 1890199 G A LOW synonymous_variant sample1 FOXM1 chr12 2968458 T C LOW synonymous_variant sample1 NCAPD2 chr12 6639088 A G LOW synonymous_variant sample1 C1RL chr12 7248675 C T MODIFIER 3_prime_UTR_variant sample1 YBX3 chr12 10851772 A T MODIFIER 3_prime_UTR_variant sample1 EPS8 chr12 15777273 C T MODERATE missense_variant sample1 KRT80 chr12 52565322 G T LOW synonymous_variant sample1 C12ORF10 chr12 53700860 A G MODERATE missense_variant sample1 CBX5 chr12 54630517 C T MODIFIER 3_prime_UTR_variant sample1 ARHGEF25 chr12 58009372 G A LOW synonymous_variant sample1 BTG1 chr12 92539378 G A LOW 5_prime_UTR_premature_start_codon_gain_variant sample1 GIT2 chr12 110368201 G A MODIFIER 3_prime_UTR_variant sample1 STX2 chr12 131274394 A T MODIFIER 3_prime_UTR_variant sample1 POLR1D chr13 28241123 A G MODIFIER 3_prime_UTR_variant sample1 UBL3 chr13 30341030 A G MODIFIER 3_prime_UTR_variant sample1 MRPL52 chr14 23303641 A C MODIFIER 3_prime_UTR_variant sample1 CFL2 chr14 35180677 AT A MODIFIER 3_prime_UTR_variant sample1 TRAPPC6B chr14 39618686 A T MODIFIER 3_prime_UTR_variant sample1 TMX1 chr14 51716467 G A LOW synonymous_variant sample1 PCNXL4 chr14 60591887 G A MODERATE missense_variant sample1 ZFP36L1 chr14 69254638 AG A MODIFIER 3_prime_UTR_variant sample1 FOS chr14 75746690 C T LOW synonymous_variant sample1 ITPK1 chr14 93406702 A G MODIFIER 3_prime_UTR_variant sample1 ITPK1 chr14 93406789 G T MODIFIER 3_prime_UTR_variant sample1 ITPK1 chr14 93407301 C A MODIFIER 3_prime_UTR_variant sample1 ITPK1 chr14 93407535 G A MODIFIER 3_prime_UTR_variant sample1 MOAP1 chr14 93649501 A G MODIFIER 3_prime_UTR_variant sample1 CCDC85C chr14 99980087 C G MODIFIER 3_prime_UTR_variant sample1 MEG3 chr14 101299065 T C MODIFIER intron_variant sample1 AHNAK2 chr14 105414810 C G LOW synonymous_variant sample1 TMOD3 chr15 52203664 A C MODIFIER 3_prime_UTR_variant sample1 ARPP19 chr15 52842628 G C MODIFIER 3_prime_UTR_variant sample1 BNIP2 chr15 59955651 A G MODIFIER 3_prime_UTR_variant sample1 FEM1B chr15 68583175 T C LOW synonymous_variant sample1 ADPGK chr15 73067234 T C LOW synonymous_variant sample1 ULK3 chr15 75136261 C G MODIFIER upstream_gene_variant sample1 PRC1 chr15 91509592 T C MODIFIER 3_prime_UTR_variant sample1 PRC1 chr15 91509734 A G MODIFIER 3_prime_UTR_variant sample1 NAA60 chr16 3534892 G A MODIFIER 3_prime_UTR_variant sample1 CARHSP1 chr16 8947077 G A MODIFIER 3_prime_UTR_variant sample1 KIF22 chr16 29811319 C T LOW synonymous_variant sample1 KIF22 chr16 29814234 G A LOW synonymous_variant sample1 ZNF768 chr16 30536918 C G MODERATE missense_variant sample1 LPCAT2 chr16 55543073 G C MODIFIER 5_prime_UTR_variant sample1 EDC4 chr16 67911517 T C LOW synonymous_variant sample1 PDPR chr16 70196186 T G MODIFIER downstream_gene_variant sample1 DHX38 chr16 72135014 T C LOW synonymous_variant sample1 TLDC1 chr16 84513463 T G MODIFIER 3_prime_UTR_variant sample1 NUP88 chr17 5289580 A G LOW synonymous_variant sample1 AURKB chr17 8108331 A G MODERATE missense_variant sample1 AURKB chr17 8108339 G A LOW synonymous_variant sample1 MPRIP chr17 17090501 A T MODIFIER 3_prime_UTR_variant sample1 MPRIP chr17 17091746 G C MODIFIER 3_prime_UTR_variant sample1 MPRIP chr17 17094539 T G MODIFIER 3_prime_UTR_variant sample1 MPRIP chr17 17094919 C T MODIFIER 3_prime_UTR_variant sample1 MPRIP chr17 17095487 G C MODIFIER 3_prime_UTR_variant sample1 MPRIP chr17 17095644 T C MODIFIER 3_prime_UTR_variant sample1 PRPSAP2 chr17 18775900 A G LOW synonymous_variant sample1 CPD chr17 28794020 A G MODIFIER 3_prime_UTR_variant sample1 GGNBP2 chr17 34942595 G A LOW synonymous_variant sample1 MRPL10 chr17 45901378 G A MODIFIER 3_prime_UTR_variant sample1 NFE2L1 chr17 46137530 AAT A MODIFIER 3_prime_UTR_variant sample1 CUEDC1 chr17 55950064 C T LOW synonymous_variant sample1 ICT1 chr17 73016621 C T LOW synonymous_variant sample1 TK1 chr17 76178748 T C LOW synonymous_variant sample1 SOCS3 chr17 76353793 A G MODIFIER 3_prime_UTR_variant sample1 CANT1 chr17 76993546 A G LOW synonymous_variant sample1 GAA chr17 78081661 A T LOW synonymous_variant sample1 GAA chr17 78093221 G A MODIFIER 3_prime_UTR_variant sample1 EPB41L3 chr18 5410574 A G LOW synonymous_variant sample1 PTPRM chr18 8069868 C T LOW synonymous_variant sample1 PTPRM chr18 8387195 G A LOW synonymous_variant sample1 PTPRM chr18 8387219 G C LOW synonymous_variant sample1 AFG3L2 chr18 12351342 C T LOW synonymous_variant sample1 NARS chr18 55268486 A C MODIFIER 3_prime_UTR_variant sample1 PMAIP1 chr18 57570333 G T MODIFIER 3_prime_UTR_variant sample1 SERPINB8 chr18 61654297 A G MODERATE missense_variant sample1 PTPRS chr19 5214697 A G MODERATE missense_variant sample1 XAB2 chr19 7685843 G A LOW synonymous_variant sample1 DNMT1 chr19 10265312 T C LOW synonymous_variant sample1 KEAP1 chr19 10600442 G C LOW synonymous_variant sample1 ILVBL chr19 15227030 G A LOW synonymous_variant sample1 RAB8A chr19 16244326 G C MODIFIER 3_prime_UTR_variant sample1 CHERP chr19 16629189 A G MODIFIER 3_prime_UTR_variant sample1 COPE chr19 19023853 T C LOW splice_region_variant&synonymous_variant sample1 HOMER3 chr19 19040312 G C MODERATE missense_variant sample1 PAK4 chr19 39669642 T C MODIFIER 3_prime_UTR_variant sample1 CLPTM1 chr19 45490570 A G LOW synonymous_variant sample1 ARHGAP35 chr19 47507434 C T MODIFIER 3_prime_UTR_variant sample1 PPP1R12C chr19 55614923 T C LOW synonymous_variant sample1 TBC1D20 chr20 418199 T A MODIFIER 3_prime_UTR_variant sample1 ENTPD6 chr20 25187724 G A MODERATE missense_variant sample1 ENTPD6 chr20 25206669 G A MODIFIER 3_prime_UTR_variant sample1 TOMM34 chr20 43571011 T G MODIFIER 3_prime_UTR_variant sample1 ZNFX1 chr20 47872377 C G MODERATE missense_variant sample1 STX16 chr20 57253404 G A MODIFIER 3_prime_UTR_variant sample1 MRPL39 chr21 26965148 G A LOW synonymous_variant sample1 IL10RB chr21 34640788 A G MODERATE missense_variant sample1 IL10RB chr21 34668747 A G MODIFIER 3_prime_UTR_variant sample1 IL10RB chr21 34669381 G A MODIFIER 3_prime_UTR_variant sample1 GART chr21 34897113 C T MODERATE missense_variant sample1 SIM2 chr21 38071665 G A MODIFIER upstream_gene_variant sample1 SIM2 chr21 38121537 T C MODIFIER 3_prime_UTR_variant sample1 DSCR3 chr21 38596160 AT A MODIFIER 3_prime_UTR_variant sample1 CBS chr21 44480616 G A LOW synonymous_variant sample1 PDXK chr21 45176304 T C MODIFIER 3_prime_UTR_variant sample1 PDXK chr21 45179113 C G MODIFIER 3_prime_UTR_variant sample1 PTTG1IP chr21 46271452 C T MODERATE missense_variant sample1 COL18A1 chr21 46896303 C G LOW synonymous_variant sample1 COL18A1 chr21 46929467 G A LOW synonymous_variant sample1 COL18A1 chr21 46932328 G A MODIFIER 3_prime_UTR_variant sample1 COL18A1 chr21 46932383 G A MODIFIER 3_prime_UTR_variant sample1 COL18A1 chr21 46932652 G A MODIFIER 3_prime_UTR_variant sample1 COL6A1 chr21 47410931 T C LOW synonymous_variant sample1 COL6A1 chr21 47424187 A G MODIFIER 3_prime_UTR_variant sample1 COL6A1 chr21 47424346 A G MODIFIER 3_prime_UTR_variant sample1 LSS chr21 47614443 A G LOW synonymous_variant sample1 DDX17 chr22 38885627 T C MODIFIER intron_variant sample1 LDOC1L chr22 44890604 T C MODIFIER 3_prime_UTR_variant sample1 SLC9A7 chrX 46461536 T C MODIFIER 3_prime_UTR_variant sample1 SLC9A7 chrX 46472826 G A LOW synonymous_variant sample1 CD99L2 chrX 149936103 C A MODIFIER 3_prime_UTR_variant sample1 DNASE1L1 chrX 153633359 G C LOW synonymous_variant sample1 chrM 410 A T MODIFIER intergenic_region